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<p>Data-Mongers and Bioinformatics folks:</p>
<p>A reminder about this upcoming opportunity that went out in
Headlines:<br>
</p>
<p>INTERESTED IN CLOUD COMPUTING? SEMINAR AND TUTORIAL ON JUNE 20<br>
WHOI's Data Science Summer Series will kick-off on June 20 with a
seminar and tutorial for the Jetstream cloud computing platform, a
production cloud system funded by the NSF. Come to the seminar at
11 a.m., for an overview, then join us in the afternoon from 1 – 4
p.m., with your laptop for a hands-on tutorial using Jetstream via
the Atmosphere web interface. The seminar and tutorial will be in
the Smith Conference Room (Village Campus). Note: We'll
accommodate those who would like to leave early for WHOI Employee
Appreciation.<br>
Contact: Stace Beaulieu, ext. 3536<br>
Relevant Web Link: <a class="moz-txt-link-freetext" href="https://www.whoi.edu/ocean-informatics">https://www.whoi.edu/ocean-informatics</a><br>
<br>
</p>
<div class="moz-cite-prefix">On 5/13/2019 9:25 AM, Stace Beaulieu
wrote:<br>
</div>
<blockquote type="cite"
cite="mid:c8fdea90-e674-17bb-9cb3-a0ca757d36c8@whoi.edu">
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<p>Data-Mongers and Bioinformatics folks:<br>
</p>
<p class=""><b class=""><a
href="https://docs.google.com/drawings/d/1Y9kXVZZ3Fd2xJxW8gnIluXeHZ3M6QrGgqBzzuHm86VU/edit?usp=sharing"
class="" moz-do-not-send="true">WHOI's Data Science Summer
Series</a></b><b class=""> will kick-off on June 20th</b><b
class=""> with a seminar and tutorial for the Jetstream cloud
computing platform</b> (<a class="moz-txt-link-freetext"
href="https://jetstream-cloud.org/" moz-do-not-send="true">https://jetstream-cloud.org/</a>),
led by Jeremy Fischer from Indiana University. Jetstream is a
production cloud system funded by the NSF for the national
science and engineering research communities - meaning: it's
available to us for free. Jetstream is a user-friendly cloud
environment created to give researchers and students access to
computing and data analysis resources on demand. Jetstream may
be used for creating workflows to either use at smaller scale
with a handful of CPUs or to port to larger environments after
doing your proof of concept work at a smaller level.</p>
<p class=""><b class="">Location: WHOI Smith Conf. Room (Village
Campus)</b></p>
<p class=""><b class="">Date/time: June 20, seminar 11am - noon,
tutorial 1 - 4pm</b></p>
<p class="">Come to the seminar at 11am for an overview of
Jetstream. Then join us in the afternoon from 1 - 4pm with your
laptop for a hands-on tutorial using Jetstream via the
Atmosphere web interface. This will include a guided
walk-through of the interface itself, the features provided, the
image catalog, launching and using virtual machines on
Jetstream, using volume-based storage, and best practices.<br
class="">
<br class="">
Atmosphere is well-suited to both novices and advanced users of
HPC resources. This tutorial is generally aimed at those
unfamiliar with cloud computing. While we will not cover
advanced topics in this particular tutorial, we will touch on
the available advanced capabilities during the initial overview.<br
class="">
<br class="">
Examples of science accelerated by Jetstream include:</p>
<p class="">Lopez, Kamel, Medina, Collins, & Baums (2018)
Multiple Facets of Marine Invertebrate Conservation Genomics.
Annual Review of Animal Biosciences, <a
class="moz-txt-link-freetext"
href="https://doi.org/10.1146/annurev-animal-020518-115034"
moz-do-not-send="true">https://doi.org/10.1146/annurev-animal-020518-115034</a></p>
<p class="">Madson, Fielding, Sheng, & Cavanaugh (2019)
High-Resolution Spaceborne, Airborne and In Situ Landslide
Kinematic Measurements of the Slumgullion Landslide in Southwest
Colorado. Remote Sensing, <a class="moz-txt-link-freetext"
href="https://doi.org/10.3390/rs11030265"
moz-do-not-send="true">https://doi.org/10.3390/rs11030265</a></p>
<p class="">Memarzadeh & Boettiger (2018) Adaptive management
of ecological systems under partial observability. Biological
Conservation, <a class="moz-txt-link-freetext"
href="https://doi.org/10.1016/j.biocon.2018.05.009"
moz-do-not-send="true">https://doi.org/10.1016/j.biocon.2018.05.009</a><br
class="">
</p>
<p class="">Contact: Stace Beaulieu, <a
class="moz-txt-link-abbreviated" href="mailto:stace@whoi.edu"
moz-do-not-send="true">stace@whoi.edu</a>, x3536<br class="">
<br class="">
No registration necessary.<br class="">
<br class="">
Sponsored by WHOI Doherty Chair in Education through Academic
Programs and co-sponsored by WHOI Ocean Informatics initiative (<a
href="http://whoi.edu/ocean-informatics" class=""
moz-do-not-send="true">whoi.edu/ocean-informatics</a>),
MBLWHOI Library, and WHOI Information Services.</p>
<pre class="moz-signature" cols="72">--
=========================================
Stace E. Beaulieu, Ph.D.
Senior Research Specialist, Biology Dept.
Mail Stop #34, Redfield 104
Woods Hole Oceanographic Institution
Woods Hole, MA 02543, USA
Email <a class="moz-txt-link-abbreviated" href="mailto:stace@whoi.edu" moz-do-not-send="true">stace@whoi.edu</a>
Tel +1 508 289 3536, Skype stace.beaulieu
<a class="moz-txt-link-freetext" href="http://www.whoi.edu/website/sbeaulieu" moz-do-not-send="true">http://www.whoi.edu/website/sbeaulieu</a>
<a class="moz-txt-link-freetext" href="https://www2.whoi.edu/staff/sbeaulieu/" moz-do-not-send="true">https://www2.whoi.edu/staff/sbeaulieu/</a>
</pre>
</blockquote>
<pre class="moz-signature" cols="72">--
=========================================
Stace E. Beaulieu, Ph.D.
Senior Research Specialist, Biology Dept.
Mail Stop #34, Redfield 104
Woods Hole Oceanographic Institution
Woods Hole, MA 02543, USA
Email <a class="moz-txt-link-abbreviated" href="mailto:stace@whoi.edu">stace@whoi.edu</a>
Tel +1 508 289 3536, Skype stace.beaulieu
<a class="moz-txt-link-freetext" href="http://www.whoi.edu/website/sbeaulieu">http://www.whoi.edu/website/sbeaulieu</a>
<a class="moz-txt-link-freetext" href="https://www2.whoi.edu/staff/sbeaulieu/">https://www2.whoi.edu/staff/sbeaulieu/</a>
</pre>
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