<html>
<head>
<meta http-equiv="content-type" content="text/html; charset=UTF-8">
</head>
<body text="#000000" bgcolor="#FFFFFF">
<p>Data-Mongers and Bioinformatics folks:<br>
</p>
<p class=""><b class=""><a
href="https://docs.google.com/drawings/d/1Y9kXVZZ3Fd2xJxW8gnIluXeHZ3M6QrGgqBzzuHm86VU/edit?usp=sharing"
class="">WHOI's Data Science Summer Series</a></b><b class="">
will kick-off on June 20th</b><b class=""> with a seminar and
tutorial for the Jetstream cloud computing platform</b> (<a
class="moz-txt-link-freetext"
href="https://jetstream-cloud.org/">https://jetstream-cloud.org/</a>),
led by Jeremy Fischer from Indiana University. Jetstream is a
production cloud system funded by the NSF for the national science
and engineering research communities - meaning: it's available to
us for free. Jetstream is a user-friendly cloud environment
created to give researchers and students access to computing and
data analysis resources on demand. Jetstream may be used for
creating workflows to either use at smaller scale with a handful
of CPUs or to port to larger environments after doing your proof
of concept work at a smaller level.</p>
<p class=""><b class="">Location: WHOI Smith Conf. Room (Village
Campus)</b></p>
<p class=""><b class="">Date/time: June 20, seminar 11am - noon,
tutorial 1 - 4pm</b></p>
<p class="">Come to the seminar at 11am for an overview of
Jetstream. Then join us in the afternoon from 1 - 4pm with your
laptop for a hands-on tutorial using Jetstream via the Atmosphere
web interface. This will include a guided walk-through of the
interface itself, the features provided, the image catalog,
launching and using virtual machines on Jetstream, using
volume-based storage, and best practices.<br class="">
<br class="">
Atmosphere is well-suited to both novices and advanced users of
HPC resources. This tutorial is generally aimed at those
unfamiliar with cloud computing. While we will not cover advanced
topics in this particular tutorial, we will touch on the available
advanced capabilities during the initial overview.<br class="">
<br class="">
Examples of science accelerated by Jetstream include:</p>
<p class="">Lopez, Kamel, Medina, Collins, & Baums (2018)
Multiple Facets of Marine Invertebrate Conservation Genomics.
Annual Review of Animal Biosciences, <a
class="moz-txt-link-freetext"
href="https://doi.org/10.1146/annurev-animal-020518-115034">https://doi.org/10.1146/annurev-animal-020518-115034</a></p>
<p class="">Madson, Fielding, Sheng, & Cavanaugh (2019)
High-Resolution Spaceborne, Airborne and In Situ Landslide
Kinematic Measurements of the Slumgullion Landslide in Southwest
Colorado. Remote Sensing, <a class="moz-txt-link-freetext"
href="https://doi.org/10.3390/rs11030265">https://doi.org/10.3390/rs11030265</a></p>
<p class="">Memarzadeh & Boettiger (2018) Adaptive management of
ecological systems under partial observability. Biological
Conservation, <a class="moz-txt-link-freetext"
href="https://doi.org/10.1016/j.biocon.2018.05.009">https://doi.org/10.1016/j.biocon.2018.05.009</a><br
class="">
</p>
<p class="">Contact: Stace Beaulieu, <a
class="moz-txt-link-abbreviated" href="mailto:stace@whoi.edu">stace@whoi.edu</a>,
x3536<br class="">
<br class="">
No registration necessary.<br class="">
<br class="">
Sponsored by WHOI Doherty Chair in Education through Academic
Programs and co-sponsored by WHOI Ocean Informatics initiative (<a
href="http://whoi.edu/ocean-informatics" class="">whoi.edu/ocean-informatics</a>),
MBLWHOI Library, and WHOI Information Services.</p>
<pre class="moz-signature" cols="72">--
=========================================
Stace E. Beaulieu, Ph.D.
Senior Research Specialist, Biology Dept.
Mail Stop #34, Redfield 104
Woods Hole Oceanographic Institution
Woods Hole, MA 02543, USA
Email <a class="moz-txt-link-abbreviated" href="mailto:stace@whoi.edu">stace@whoi.edu</a>
Tel +1 508 289 3536, Skype stace.beaulieu
<a class="moz-txt-link-freetext" href="http://www.whoi.edu/website/sbeaulieu">http://www.whoi.edu/website/sbeaulieu</a>
<a class="moz-txt-link-freetext" href="https://www2.whoi.edu/staff/sbeaulieu/">https://www2.whoi.edu/staff/sbeaulieu/</a>
</pre>
</body>
</html>